Jmol is a free, open source molecule viewer for students, educators, and researchers in For the most up-to-date scripting documentation see the Jmol/ JSmol. Documentation of Jmol’s scripting language can be found here: http://chemapps. This is the official. JSmol is a fully functional implementation of Jmol that does not Various ways to create surfaces and more documentation on surfaces.

Author: Golkis Ketaxe
Country: Lithuania
Language: English (Spanish)
Genre: Politics
Published (Last): 18 September 2018
Pages: 209
PDF File Size: 5.75 Mb
ePub File Size: 6.8 Mb
ISBN: 905-3-26738-833-6
Downloads: 20486
Price: Free* [*Free Regsitration Required]
Uploader: Mezisho

Here is its description and documentation. In general, the first of these methods is only acceptable for short scripts.

With some browser versions you can sneak by without starting object references with ‘document’. Finally, documentstion is a documentation section in this web site, for more technical details. The Jmol Applet Guide describes the Jmol applet.

Jmol – Research Computing Documentation

For more information, please visit the Project pages section. Without subscribing to any lists, you can also search the archives that collect all messages posted to the lists.

Controls whether or not rotations should be performed with wireframe rendering. Learn to use Jmol Manuals and tutorials A handbook has been published for learning Jmol, and there are jmpl other publications about Jmol.

You can also learn by examining web pages that use Jmol: Please, read instructions in this Wiki page and, if you need help, contact the developers team. The environment variable was not recognized by the JVM, which in return did not start. Running Jmol using Java Web Start. This interactive online documentation is the reference guide for all commands that form the Jmol scripting language.


Using buttons to call javascript documenyation, each of which is driving a jmol animate script. CML lib was not compiled with a classic compiler.

Jmol Documentation

In order to reference an applet on an HTML page the applet must be given a name. For more detailed documentation on RasMol scripting see http: Jmol is an open-source viewer for three-dimensional chemical structures, with features for chemicals, crystals, materials and biomolecules. It also provides a testing and demonstration page.

Jmol community Jmol Wiki A user-maintained site collecting a lot of information about the use of Jmol. Jmol links Website Sourceforge. Backward compatibility changes of behavior across versions Features added since version 10 Users mailing list and a mirror.

See JSmol for more details.

Jmol Wiki – Scripting

Particularly, if you are learning how to use JmolApplet and scripting, you are encouraged to only use the JavaScript library. Those with interest in molecular visualization, especially the education and research communities, are encouraged to join the jmol-users mailing list or even the jmol-developers mailing list. This example uses onLoad to execute JavaScript which, in turn, drives the applet.

Get the files from SourceForge. This is the homepage for the Jmol Community Wiki. You can change to another language if desired. By default, documentztion are rendered with perspective depth. Embedding the Jmol Applet in a Web Page. Jmol as a standalone application.


What Jmol can documenattion Samples Check out the Screenshot Gallery still images to see samples of what can be done with Jmol and the Demonstration pages especially jsmol.

They cover the basic functionality of both application and applet, but they have not been updated recently particularly, for features in version 11 of Jmol.

Learn by example You can also learn by examining web pages that use Jmol: Table of Contents Testing results. How to configure a wiki so that it uses the Jmol applet. If you prefer, a list of articles that describe Jmol can be found in the Jmol Dicumentation section of the Jmol Wiki. Renders atoms and bonds as shaded spheres and cylinders.

The applet is tested and working with Internet Explorer, Netscape, Opera, Mozilla and derivatives and Konqueror on various platforms. This flexibility enables you to create complex user interactions that are controlled using standard web page elements.

Neither does Safari which is based upon Konqueror.

The recommended way to cite Jmol is: